1. Ozkan SB, Wu AG, Chodera JD, Dill KA, "Protein Folding by Zipping and Assembly", Proc. Natl. Acad. Sci. USA. (2007) 104: 11987-11992

2. Dill KA, Ozkan SB, Wiekl TR, Chodera JD, Voelz VA, "The protein folding problem: when will it be solved?", Curr. Opin. Struct. Biol. (2007) 17: 342-346

3. Ghosh K, Ozkan SB, Dill KA "The Ultimate Speed Limit of Protein Folding is Conformational Searching", J. Am. Chem. Soc. (2007) 129: 11920-11927

4. Chodera, JD, Wu A, Ozkan SB and Dill KA, "Are Molecular Mechanics Forcefields Capable of Protein Structure Prediction" submitted to J. Chem. Theory Comput.

5. Ozkan SB and Meirovitch H, 'Conformation Search of Peptides and Proteins:" The Monte Carlo Minimization with Adaptive Bias Applied to Hepta-Peptide Deltorphin', Journal of Computational Chemistry (2004), 25:565-572.

6. Ozkan SB, Kirca S and Haliloglu T,"Unfolding Events of Chymotrypsin Inhibitor 2 Revealed by off-lattice Monte Carlo Simulations and their Consistency from Structure-Based Analysis of Conformations", Polymers (2004), 45 :581-595.

7. Ozkan SB and Meirovitch H, "Efficient Conformational Search Method for Peptides and Proteins: Monte Carlo Minimization with an Adaptive Bias", Journal of Physical Chemistry (2003), 107: 9128-9131.

8. Ozkan SB, Dill KA and Bahar I, "Computing the Transition State Populations in Simple Protein Models", Biopolymers (2003), 68: 35-46.

9. Ozkan SB, Dill KA and Bahar I, "Fast-Folding Protein Kinetics, Hidden Intermediates and the Sequential Stabilization Model", Protein Science (2002), 11:1958-1970

10. Ozkan SB, Bahar I and Dill KA, "Nonclassical Phi-values in Protein Folding Kinetics", Nature Structural Biology (2001) 98: 765-767

11. Ozkan B and Bahar I, " Recognition of Native Structure from a Complete Enumaration of Low Resolution Conformation with Constraints" Proteins Structure Function and Genetics (1998), 32: 211-222.